Flowchart showing pipeline from microscope video through enhancement, segmentation, and feature tracking, connected to a front end or other image processing software using an application programming interface

Our processing pipeline provides extensible modules for video enhancement, automatic cell segmentation, and feature tracking specifically to address the needs of scientists studying neurons and glia.


Welcome to the home page of the Neuroglia Image Toolkit. This project is led by Scott Acton, Gustavo Rohde, and Daniel Weller, in the Charles L. Brown Department of Electrical and Computer Engineering and the Department of Biomedical Engineering, at the University of Virginia. More information about this project will be coming soon!

NSF LogoThis material is based upon work supported by the National Science Foundation under Grant No. 1759802. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

Copyright (c) 2018, the Rector and Visitors of the University of Virginia. All rights reserved. “ImageJ” and “Vaa3D” are the property of their respective owners. Legal notice.